Taxonomic names from J. S. Nelson et al. 2016
- Acestrorhynchinae, subfamily [Acestrorhynchidae]
- Acheilognathinae, subfamily () [Cyprinidae]
- Agoniatinae, subfamily [Characidae]
- Ailiidae, family [Ailiidae]
- Alepocephali, superorder () [Actinopteri]
- Alestoidea, superfamily [Characiformes]
- Amarsipidae, family [Amarsipidae]
- Amphiliinae, subfamily [Amphiliidae]
- Amphioxiformes, order [Amphioxiformes]
- Anaspida, class (Traquair) [Anaspida]
- Anaspidiformes, order [Anaspidiformes]
- Anaspidomorphi, superclass [Anaspidomorphi]
- Angistrinae, subfamily [Loricariidae]
- Aphyocharacinae, subfamily [Characidae]
- Aphyoditeinae, subfamily [Characidae]
- Aphyonidae, family () [Bythitidae]
- Aploactinidae, family () [Aploactinidae]
- Appendicularia, class [Appendicularia]
- Araripchthyiformes, order [Araripchthyiformes]
- Archipelepidiformes, order [Archipelepidiformes]
- Aspredininae, subfamily [Aspredinidae]
- Asymmetrontidae, family [Epigonichthyidae]
- Auchenoglanididae, family [Auchenoglanididae]
- Austroglanididae, family [Austroglanididae]
- Badidae, family [Badidae]
- Balitoridae, family [Balitoridae]
- Barbuccidae, family [Barbuccidae]
- Bathylaconidae, family, Parr 1948 [Bathylaconidae]
- Bathylutichthyidae, family [Bathylutichthyidae]
- Bathymyrinae, subfamily [Congridae]
- Bathysauroididae, family [Bathysauroididae]
- Batrachoidida [Actinopteri]
- Bembridae, family [Bembridae]
- Berycida [Actinopteri]
- Bivibranchiini, tribe [Hemiodontidae]
- Brachythoracoidei, suborder [Arthrodira]
- Branchiostomatidae, family () [Branchiostomatidae]
- Brochoadmonidae, family [Brochoadmonidae]
- Bryconinae, subfamily [Characidae]
- Bunocephalinae, subfamily [Aspredinidae]
- Callanthiidae, family [Callanthiidae]
- Callichthyinae, subfamily [Callichthyidae]
- Caproiformes, order () [Caproiformes]
- Catostomini, tribe [Catostomidae]
- Caturoidei, suborder (Owen 1860) [Amiiformes]
- Cavenderichthys, Bean 2006 [Ichthyodectiformes]
- Cephaloxenidae, family [Cephaloxenidae]
- Cetopsinae, subfamily [Cetopsidae]
- Cetopsoidei, suborder [Siluriformes]
- Chaninae, subfamily, Günther 1869 [Chanidae]
- Characinae, subfamily [Characidae]
- Characoidea, superfamily [Characiformes]
- Charcidiinae, subfamily [Crenuchidae]
- Cheimarrhichthyidae, family () [Cheimarrhichthyidae]
- Cheiracanthidae, family [Cheiracanthidae]
- Cheirodontinae, subfamily [Characidae]
- Cheirolepidiformes, order [Cheirolepidiformes]
- Chlopsoidei, suborder [Anguilliformes]
- Chondrichthyomorphi [Chondrichthyomorphi]
- Chondrosteiformes, order [Chondrosteiformes]
- Chuchinolepididae, family [Chuchinolepididae]
- Cladistia, infraclass (Cope 1870) [Cladistia]
- Clarioidea, superfamily [Siluriformes]
- Clupeacharacinae, subfamily [Characidae]
- Cobitoidea, superfamily, Swainson 1838 [Cypriniformes]
- Colocongridae, family [Derichthyidae]
- Copionodontinae, subfamily [Trichomycteridae]
- Corydoradinae, subfamily [Callichthyidae]
- Crenuchinae, subfamily [Crenuchidae]
- Crenuchoidea, superfamily [Characiformes]
- Ctenacanthimorpha, superorder [Chondrichthyes]
- Ctenodontiformes, order [Ctenodontiformes]
- Curimatidae, family [Curimatidae]
- Cycleptinae, subfamily, J. S. Nelson et al. 2016 [Catostomidae]
- Cyematidae, family [Cyematidae]
- Cypriniphysi [Actinopteri]
- Cyprinoidea, superfamily [Cypriniformes]
- Cyttidae, family [Cyttidae]
- Danioninae, subfamily [Cyprinidae]
- Dapediiformes, order [Dapediiformes]
- Delturinae, subfamily [Loricariidae]
- Dentatherinidae, family [Dentatherinidae]
- Diabolepidiformes, order [Diabolepidiformes]
- Dialipiniformes, order [Dialipiniformes]
- Dichistiidae, family [Dichistiidae]
- Dinolestidae, family [unclassified family]
- Dinopercidae, family [Dinopercidae]
- Dipnomorpha, infraclass (Ahlberg 1991) [Dipnomorpha]
- Dipnorhynchiformes, order [Dipnorhynchiformes]
- Doliolida, order [Doliolida]
- Doradoidea, superfamily [Siluriformes]
- Dorypteriformes, order [Dorypteriformes]
- Doumeinae, subfamily [Amphiliidae]
- Dysommatinae, subfamily [Anguilliformes]
- Ehiravinae, subfamily [Clupeidae]
- Elasmobranchii, infraclass (Bonaparte 1838) [Chondrichthyes]
- Ellimmichthyinae, subfamily [Paraclupeidae]
- Ellimmichthyoidei, suborder [Ellimmichthyiformes]
- Ellimminae, subfamily [Paraclupeidae]
- Ellopostomatidae, family [Ellopostomatidae]
- Eptatretinae, subfamily () [Myxinidae]
- Erethistidae, family [Erethistidae]
- Erimyzontini, tribe, J. S. Nelson et al. 2016 [Catostomidae]
- Erythrinoidea, superfamily [Characiformes]
- Eschmeyeridae, family [Eschmeyeridae]
- Euantiarcha, infraorder (Janvier and Pan 1982) [Antiarchiformes]
- Eugnathostomata [Eugnathostomata]
- Eulophiidae, family [Eulophiidae]
- Gastromyzontidae, family [Gastromyzontidae]
- Gerdalepididae, family [Gerdalepididae]
- Gibberichthyidae, family [Gibberichthyidae]
- Gladiobranchidae, family [Gladiobranchidae]
- Glanapteryginae, subfamily [Trichomycteridae]
- Glyptosterninae, subfamily [Sisoridae]
- Grammatidae, family [Grammatidae]
- Grammicolepididae, family () [Grammicolepididae]
- Gymnocharacinae, subfamily [Characidae]
- Hapalogeniidae, family [Hapalogeniidae]
- Helogeneinae, subfamily [Cetopsidae]
- Hemiodontinae, subfamily [Hemiodontidae]
- Hemiodontini, tribe [Hemiodontidae]
- Heterocharacinae, subfamily [Acestrorhynchidae]
- Heterodontinae, subfamily [Osteoglossidae]
- Heteromyridae, family [Muraenidae]
- Hexanchida [Squalomorphii]
- Hexatrygonidae, family [Hexatrygonidae]
- Hispidoberycidae, family [Hispidoberycidae]
- Hoplomyzontinae, subfamily [Aspredinidae]
- Hybodonta, infraclass () [Chondrichthyes]
- Hypoptopomatinae, subfamily [Loricariidae]
- Hypotominae, subfamily [Loricariidae]
- Hypsidoroidei, suborder [Siluriformes]
- Iguanodectinae, subfamily [Characidae]
- Ilyophinae, subfamily () [Anguilliformes]
- Jianghanichthyidae, family [Jianghanichthyidae]
- Kathemacanthidae, family [Kathemacanthidae]
- Kneriinae, subfamily, Gunther 1868 [Kneriidae]
- Lacantuniidae, family [Lacantuniidae]
- Lampetrinae, subfamily [Petromyzontidae]
- Lamprimorpha, superorder [Actinopteri]
- Lebiasininae, subfamily [Lebiasinidae]
- Leptoglaninae, subfamily [Amphiliidae]
- Lestidiidae, family [Lestidiidae]
- Lithogeneinae, subfamily [Loricariidae]
- Loricariinae, subfamily [Loricariidae]
- Loricarioidei, suborder () [Siluriformes]
- Mesacanthidae, family [Mesacanthidae]
- Microbrachiidae, family [Microbrachiidae]
- Milyeringidae, family [Milyeringidae]
- Monognathidae, family [Monognathidae]
- Moringuoidei, suborder [Anguilliformes]
- Moroniformes, order [Moroniformes]
- Moxostomatini, tribe [Catostomidae]
- Muraeninae, subfamily [Muraenidae]
- Muraenolepididae, family () [Muraenolepididae]
- Myrophinae, subfamily [Ophichthidae]
- Myxininae, subfamily [Myxinidae]
- Myxocyprininae, subfamily [Catostomidae]
- Nemamyxine, Richardson 1958 [Myxinidae]
- Neoplecostominae, subfamily [Loricariidae]
- Normanichthyidae, family [Normanichthyidae]
- Nothobranchiidae, family [Nothobranchiidae]
- Notocheiridae, family [Notocheiridae]
- Notomyxine, Nani and Gneri 1951 [Myxinidae]
- Notopterinae, subfamily [Notopteridae]
- Ophidiida [Actinopteri]
- Opsariichthyinae, subfamily [Cyprinidae]
- Oreosomatidae, family [Oreosomatidae]
- Osmeromorpha, superorder [Actinopteri]
- Osteolepidida, infraclass (Boulenger 1901) [Osteolepidida]
- Palaeoesocidae, family [Palaeoesocidae]
- Parabrotulidae, family [Parabrotulidae]
- Paralichthodidae, family [Paralichthodidae]
- Parascyllioidei, suborder [Orectolobiformes]
- Peipiaosteiformes, suborder [Peipiaosteiformes]
- Pelloninae, subfamily [Pristigasteridae]
- Petromyzontinae, subfamily [Petromyzontidae]
- Phlyctaenioidei, infraorder [Arthrodira]
- Phractolaeminae, subfamily () [Kneriidae]
- Phyllolepidoidei, suborder [Arthrodira]
- Platyrhinoidei, suborder [Myliobatiformes]
- Plesiobatidae, family [Plesiobatidae]
- Polymerolepidiformes, order [Polymerolepidiformes]
- Poracanthodidae, family [Poracanthodidae]
- Porolepidae, family [Porolepidae]
- Porolepimorpha, superorder [Dipnomorpha]
- Pristolepididae, family [Pristolepididae]
- Profundulidae, family [Profundulidae]
- Protacrodontiformes, order [Protacrodontiformes]
- Protanguillidae, family [Protanguillidae]
- Protanguilloidei, suborder [Anguilliformes]
- Prototroctidae, family [Prototroctidae]
- Pseudopetalichthyiformes, order [Pseudopetalichthyiformes]
- Pseudoscaphirhynchinae, subfamily [Acipenseridae]
- Psilorhynchidae, family, Hora 1926 [Psilorhynchidae]
- Pterichthyidae, family [Asterolepididae]
- Ptycholepidiformes, order () [Ptycholepiformes]
- Pyrosomida, order [Pyrosomida]
- Pyrrhulininae, subfamily [Lebiasinidae]
- Radiicephalidae, family [Radiicephalidae]
- Rhizodontida, infraclass (Andrews and Westoll 1970) [Rhizodontida]
- Rhizodopsidae, family [Rhizodopsidae]
- Rhoadsiinae, subfamily [Characidae]
- Ritidae, family [Ritidae]
- Rivulidae, family [Rivulidae]
- Roestinae, subfamily [Acestrorhynchidae]
- Rubicundinae, subfamily [Myxinidae]
- Rubicundus, Fernholm [Myxinidae]
- Rubiesichthyinae, subfamily [Chanidae]
- Saccopharyngoidei, suborder, J. S. Nelson et al. 2016 [Anguilliformes]
- Salpida, order [Salpida]
- Sarcoglanidinae, subfamily [Trichomycteridae]
- Scaphirhynchinae, subfamily (Bonaparte 1846) [Acipenseridae]
- Scombrolabraciformes, order [Scombrolabraciformes]
- Serpenticobitidae, family [Serpenticobitidae]
- Sheenstia, López-Arbarello and Sferco 2011 [Lepisosteiformes]
- Simenchelyinae, subfamily () [Synaphobranchidae]
- Sinolepidida, infraorder [Antiarchiformes]
- Sisorinae, subfamily [Sisoridae]
- Sisoroidea, superfamily [Siluriformes]
- Squaliobarbinae, subfamily [Cyprinidae]
- Squatinida () [Chondrichthyes]
- Stegophilinae, subfamily [Trichomycteridae]
- Stethaprioninae, subfamily [Characidae]
- Stevardiinae, subfamily [Characidae]
- Synaphobranchinae, subfamily [Synaphobranchidae]
- Synaphobranchoidei, suborder [Anguilliformes]
- Tetrabrachiidae, family [Tetrabrachiidae]
- Thalasseleotridae, family (Gill and Mooi 2012) [Thalasseloetridae]
- Thaliacea, class, Nielsen 1995 [Thaliacea]
- Thaumatichthyidae, family () [Thaumatichthyidae]
- Thelodontomorphi, superclass (Jackel 1911) [Thelodontomorphi]
- Thoburniini, tribe [Catostomidae]
- Thorectichthyinae, subfamily [Paraclupeidae]
- Trachyrincidae, family (Günther 1870) [Macrouridae]
- Trichogeninae, subfamily [Trichomycteridae]
- Trichomycterinae, subfamily [Trichomycteridae]
- Tridentinae, subfamily [Trichomycteridae]
- Uropterygiinae, subfamily [Muraenidae]
- Vaillantellidae, family [Vaillantellidae]
- Valenciidae, family [Valenciidae]
- Vandelliinae, subfamily [Trichomycteridae]
- Varasichthyidae, family [Varasichthyidae]
- Xenacanthimorpha, superorder () [Chondrichthyes]
- Xenomystinae, subfamily [Notopteridae]
- Yunnanolepididae, family, Zhang 1978 [Yunnanolepididae]
- Zaniolepididae, family () [Zaniolepididae]