Phylum Ginkgophyta Bessey 1907
Parent taxon: Embryophyta according to E. Taylor et al. 2008
Sister taxa: Acylomurus, Antherocerotophyta, Anthocerotophyta, Concavissimisporites, Coniferophyta, Cycadophyta, Divisisporites, Gigantopteridales, Hermanophytales, Iraniales, Lusatisporis, Lycophyta, Progymnospermophyta, Pteridospermophyta, Sphenophyta, Zosterophyllophyta
Subtaxa: Adiantophyllum Biarmobaiera Culgoweria Dicranophyllum Furcifolium Ginkganthus Ginkgoites Ginkgoopsida Ginkgophyllum Ginkgophyton Ginkgophyton Ginkgopsis Glossopteropsis Glottophyllum Hildesheimia Idelopteris Jeanpaulia Kirkoria Phylladodesme Psygmophyllum Rhipidopsis Sidhiphyllites Staphidiophora Stephanophyllum Zonarides